Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
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HENDRIKSEN, Rene Sjogren, MUNK, Patrick, VAN BUNNIK, Bram A.D., MCNALLY, Luke, LUKJANCENKO, Oksana, RODER, Timo, NIEUWENHUIJSE, David F., KARLSMOSE PEDERSEN, Susanne, KJELDGAARD, Jette Sejer, KAAS, Rolf S, LANKEN CONRADSEN CLAUSEN, Philip Thomas, VOGT, Josef Korbinian, LEEKITCHAROENPHON, Pimlapas, VAN DE SCHANS, Milou G.M., ZUIDEMA, Tina, DE RODA HUSMAN, Ana Maria, RASMUSSEN, Simon, PETERSEN, Bent, AMID, Clara, COCHRANE, Guy, SICHERITZ-PONTEN, Thomas, SCHMITT, Heike, MATHEU ALVAREZ, Jorge Raul, AIDARA-KANE, Awa, PAMP, Sunje J., LUND, Ole, HALD, Tine, WOOLHOUSE, Mark E.J., KOOPMANS, Marion P.G., VIGRE, Hakan, PETERSEN, Thomas Nordahl, AARESTRUP, Frank Moller, BOSEVSKA, Golubinka, KOCHUBOVSKI, Mihail. Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage. In: Nature Communications, 2019, vol. 10, p. 0. ISSN 2041-1723. DOI: https://doi.org/10.1038/s41467-019-08853-3
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Nature Communications
Volumul 10 / 2019 / ISSN 2041-1723

Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage

DOI:https://doi.org/10.1038/s41467-019-08853-3

Pag. 0-0

Hendriksen Rene Sjogren1, Munk Patrick1, van Bunnik Bram A.D.2, McNally Luke2, Lukjancenko Oksana3, Roder Timo3, Nieuwenhuijse David F.4, Karlsmose Pedersen Susanne3, Kjeldgaard Jette Sejer3, Kaas Rolf S3, Lanken Conradsen Clausen Philip Thomas3, Vogt Josef Korbinian3, Leekitcharoenphon Pimlapas3, van de Schans Milou G.M.5, Zuidema Tina5, de Roda Husman Ana Maria6, Rasmussen Simon7, Petersen Bent7, Amid Clara8, Cochrane Guy8, Sicheritz-Ponten Thomas9, Schmitt Heike6, Matheu Alvarez Jorge Raul10, Aidara-Kane Awa10, Pamp Sunje J.3, Lund Ole7, Hald Tine3, Woolhouse Mark E.J.2, Koopmans Marion P.G.4, Vigre Hakan3, Petersen Thomas Nordahl3, Aarestrup Frank Moller3, Bosevska Golubinka11, Kochubovski Mihail11
 
1 Danmarks Tekniske Universitet,
2 University of Edinburgh,
3 National Food Institute, Technical University of Denmark,
4 Erasmus University Medical Center Rotterdam,
5 Wageningen University and Research,
6 National Institute for Public Health and the Environment (RIVM), Bilthoven,
7 Technical University of Denmark,
8 European Bioinformatics Institute (EMBL-EBI), Hinxton,
9 AIMST University,
10 World Health Organization,
11 ”Nicolae Testemițanu” State University of Medicine and Pharmacy
 
 
Disponibil în IBN: 25 martie 2019


Rezumat

Antimicrobial resistance (AMR) is a serious threat to global public health, but obtaining representative data on AMR for healthy human populations is difficult. Here, we use metagenomic analysis of untreated sewage to characterize the bacterial resistome from 79 sites in 60 countries. We find systematic differences in abundance and diversity of AMR genes between Europe/North-America/Oceania and Africa/Asia/South-America. Antimicrobial use data and bacterial taxonomy only explains a minor part of the AMR variation that we observe. We find no evidence for cross-selection between antimicrobial classes, or for effect of air travel between sites. However, AMR gene abundance strongly correlates with socio-economic, health and environmental factors, which we use to predict AMR gene abundances in all countries in the world. Our findings suggest that global AMR gene diversity and abundance vary by region, and that improving sanitation and health could potentially limit the global burden of AMR. We propose metagenomic analysis of sewage as an ethically acceptable and economically feasible approach for continuous global surveillance and prediction of AMR.

Cuvinte-cheie
Bacteria (microorganisms)