Three models for gene assembly in ciliates: a comparison
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Bazele materiale ale vieții. Biochimie. Biologie moleculară. Biofizică (664)
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LANGILLE, Miika, PETRESCU, Ion, ROGOJIN, Vladimir. Three models for gene assembly in ciliates: a comparison. In: Computer Science Journal of Moldova, 2010, nr. 1(52), pp. 15-40. ISSN 1561-4042.
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Computer Science Journal of Moldova
Numărul 1(52) / 2010 / ISSN 1561-4042 /ISSNe 2587-4330

Three models for gene assembly in ciliates: a comparison
CZU: 004.8:519.756.2:577.212

Pag. 15-40

Langille Miika1, Petrescu Ion12, Rogojin Vladimir1
 
1 Abo Akademi University, Turku, Finland,
2 Academy of Finland
 
 
Disponibil în IBN: 2 decembrie 2013


Rezumat

We survey in this paper the main differences among three variants of an intramolecular model for gene assembly: the general, the simple, and the elementary models. We present all of them in terms of sorting signed permutations and compare their behavior with respect to: (i) completeness, (ii) confluence (with the notion defined in three different setups), (iii) decidability, (iv) characterization of the sortable permutations in each model, (v) sequential complexity, and (vi) experimental validation.

Cuvinte-cheie
Ciliate, simple gene assembly, simple model, elementary model,

confluence

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<dc:creator>Langille, M.</dc:creator>
<dc:creator>Petrescu, I.</dc:creator>
<dc:creator>Rogojin, V.I.</dc:creator>
<dc:date>2010-01-05</dc:date>
<dc:description xml:lang='en'>We survey in this paper the main differences among three
 variants of an intramolecular model for gene assembly: the general, the simple, and the elementary models. We present all of
 them in terms of sorting signed permutations and compare their

behavior with respect to: (i) completeness, (ii) confluence (with
 the notion defined in three different setups), (iii) decidability, (iv)
 characterization of the sortable permutations in each model, (v)
 sequential complexity, and (vi) experimental validation.</dc:description>
<dc:source>Computer Science Journal of Moldova 52 (1) 15-40</dc:source>
<dc:subject>Ciliate</dc:subject>
<dc:subject>simple gene assembly</dc:subject>
<dc:subject>simple model</dc:subject>
<dc:subject>elementary model</dc:subject>
<dc:subject>confluence</dc:subject>
<dc:title>Three models for gene assembly in ciliates: a
comparison</dc:title>
<dc:type>info:eu-repo/semantics/article</dc:type>
</oai_dc:dc>