The TB portals: An open-access, web-based platform for global drug-resistant- tuberculosis data sharing and analysis
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ROSENTHAL, Alex, GABRIELIAN, Andrei E., ENGLE, Eric, HURT, Darrell E., ALEXANDRU, Sofia, KRUDU, V., SERGUEEV, Eugene, KIRICHENK, Valery, LAPITSKII, Vladzimir, SNEZHKO, Eduard, KOVALEV, Vassili, ASTROVKO, Andrei, TUZIKOV, Alexander, TAAFFE, Jessica E., HARRIS, Michael, LONG, Alyssa, WOLLENBERG, Kurt R., AKHUNDOVA, Irada, ISMAYILOVA, Sharafat, SKRAHIN, Aliaksandr, MAMMADBAYOV, Elcan, GADIROVA, Hagigat, ABUZAROV, Rafik, SEYFADDINOVA, Mehriban, AVALIANI, Zaza, STRÂMBU, Irina Ruxandra, ZAHARIA, Dragoş C., MUNTEAN, Alexandru A., GHITA, Eugenia, BOGDAN, Miron Alexandru, MÎNDRU, Roxana, SPÎNU, Victor, SORA, Alexandra, ENE, Catalina, VASHAKIDZE, Sergo, SHUBLADZE, Natalia, NANAVA, Ucha, SKRAHINA, Alena, TARTAKOVSKY, Michael. The TB portals: An open-access, web-based platform for global drug-resistant- tuberculosis data sharing and analysis. In: Journal of Clinical Microbiology, 2017, nr. 11(55), pp. 3267-3282. ISSN 0095-1137. DOI: https://doi.org/10.1128/JCM.01013-17
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Journal of Clinical Microbiology
Numărul 11(55) / 2017 / ISSN 0095-1137 /ISSNe 1098-660X

The TB portals: An open-access, web-based platform for global drug-resistant- tuberculosis data sharing and analysis

DOI:https://doi.org/10.1128/JCM.01013-17

Pag. 3267-3282

Rosenthal Alex1, Gabrielian Andrei E.1, Engle Eric1, Hurt Darrell E.1, Alexandru Sofia2, Krudu V.2, Sergueev Eugene3, Kirichenk Valery3, Lapitskii Vladzimir3, Snezhko Eduard3, Kovalev Vassili3, Astrovko Andrei4, Tuzikov Alexander3, Taaffe Jessica E.1, Harris Michael1, Long Alyssa1, Wollenberg Kurt R.1, Akhundova Irada5, Ismayilova Sharafat5, Skrahin Aliaksandr6, Mammadbayov Elcan5, Gadirova Hagigat5, Abuzarov Rafik5, Seyfaddinova Mehriban5, Avaliani Zaza78, Strâmbu Irina Ruxandra8, Zaharia Dragoş C.8, Muntean Alexandru A.8, Ghita Eugenia8, Bogdan Miron Alexandru8, Mîndru Roxana8, Spînu Victor8, Sora Alexandra8, Ene Catalina8, Vashakidze Sergo7, Shubladze Natalia7, Nanava Ucha7, Skrahina Alena4, Tartakovsky Michael1
 
1 National Institute of Allergy and Infectious Diseases, Department of Health and Human Services, Bethesda,
2 Ministerul Sănătăţii al Republicii Moldova,
3 United Institute of Informatics Problems of National Academy of Sciences of Belarus,
4 Republican Scientific and Practical Centre of Pulmonology and Tuberculosis, Ministry of Health, Minsk,
5 Scientific Research Institute of Lung Diseases, Ministry of Health, Baku,
6 Belarusian State Medical University,
7 National Center for Tuberculosis and Lung Diseases, Tbilisi,
8 Institutul de Pneumologie „Marius Nasta“
 
 
Disponibil în IBN: 14 decembrie 2017


Rezumat

The TB Portals program is an international consortium of physicians, radiologists, and microbiologists from countries with a heavy burden of drug-resistant tuberculosis working with data scientists and information technology professionals. Together, we have built the TB Portals, a repository of socioeconomic/geographic, clinical, laboratory, radiological, and genomic data from patient cases of drug-resistant tuberculosis backed by shareable, physical samples. Currently, there are 1,299 total cases from five country sites (Azerbaijan, Belarus, Moldova, Georgia, and Romania), 976 (75.1%) of which are multidrug or extensively drug resistant and 38.2%, 51.9%, and 36.3% of which contain X-ray, computed tomography (CT) scan, and genomic data, respectively. The top Mycobacterium tuberculosis lineages represented among collected samples are Beijing, T1, and H3, and single nucleotide polymorphisms (SNPs) that confer resistance to isoniazid, rifampin, ofloxacin, and moxifloxacin occur the most frequently. These data and samples have promoted drug discovery efforts and research into genomics and quantitative image analysis to improve diagnostics while also serving as a valuable resource for researchers and clinical providers. The TB Portals database and associated projects are continually growing, and we invite new partners and collaborations to our initiative. The TB Portals data and their associated analytical and statistical tools are freely available at https://tbportals.niaid.nih.gov/.

Cuvinte-cheie
Digital health, MDR-TB, Mycobacterium tuberculosis, Query, tuberculosis, XDR-TB,

Drug-resistant TB, Interactive portals